Gluten-Free Morning Glory Muffins: Moist One-Bowl Recipe

If you are looking for gluten free breakfast ideas, these morning glory muffins are a lovely way to start your day. Made with gluten-free flour, grated carrots and apples, shredded coconut, raisins, and a bright hint of orange, these muffins are moist and tender thanks to applesauce in the batter. This one‑bowl recipe uses a few simple gluten‑free baking tips so the muffins bake up light and fluffy rather than dense or gummy.

overhead shot of muffin tops close together.

Gluten-Free Morning Glory Carrot Muffins

I developed this gluten‑free version of morning glory muffins by adapting a successful zucchini muffin base to account for the extra moisture in grated carrots and apples. When baking with gluten‑free flour and high‑water ingredients, a few adjustments keep the texture pleasant and consistent.

Gluten‑free all‑purpose blends don’t absorb liquids the same way wheat flour does, which can lead to gummy crumbs or sinking tops if not handled correctly. These muffins address that by using a mix of oil and applesauce for fat — applesauce helps hydrate the gluten‑free starches so the crumb stays tender without adding excess oil. Another easy trick is letting the batter rest for about 15 minutes before baking to allow the starches to hydrate and bind, producing a softer, more cohesive texture.

Ingredient Tidbits

These morning glory muffins are flexible: omit or swap mix‑ins to suit your tastes. They pair warm spice with bright orange for a balanced flavor. Key notes:

  • Gluten‑free flour – Any reliable gluten‑free all‑purpose blend will work. If you need dairy‑free results, check your blend for milk powder.
  • Applesauce – Unsweetened applesauce keeps added sugar low and helps keep muffins moist. Sweetened applesauce can be used if that’s all you have.
  • Oil – Use a neutral or mild oil such as canola, avocado, grapeseed, or melted coconut oil.
  • Grated carrots and apples – Peel and grate both with a box grater or food‑processor disc. If substituting crushed pineapple, replace 1/2 cup of the shredded apple with well‑drained pineapple and squeeze excess juice first.
  • Sweeteners – A blend of light brown sugar and honey adds sweetness and structure. You can replace honey with maple syrup and brown sugar with coconut sugar, but maintaining a balance of wet and dry sweeteners helps keep texture consistent.
  • Orange – Zest and juice from one orange brighten the muffins and are highly recommended for best flavor.
  • Mix‑ins – Raisins, shredded coconut, and chopped nuts are classic additions. Omit or swap any of these to suit preferences.

Let’s Make This Together

Below are the step‑by‑step directions. For precise ingredient amounts and the full recipe card, see the recipe section farther down.

the eggs in a glass bowl with other wet ingredients.
Whisk the wet ingredients and brown sugar together in a large bowl.
the wet ingredients in a bowl with grated carrots, apples, and other mix ins.
Add grated carrots, apples and other mix‑ins to the wet base.
the dry ingredients being mixed into the bowl.
Stir in the gluten‑free flour and spices until no dry pockets remain.
a muffin tin with filled with unbaked batter.
Divide batter into liners, filling nearly to the top for rounded muffin tops.
  1. This recipe yields 16 muffins. Line standard muffin cups with paper liners or grease them and set aside.
  2. In a large bowl, whisk together the applesauce, packed light brown sugar, oil, honey, eggs, orange zest, orange juice, and vanilla extract until smooth.
  3. Stir in the grated carrots, grated apple, raisins, shredded coconut, and chopped pecans. Add the gluten‑free flour, baking soda, cinnamon, ground ginger, and salt, stirring until no pockets of flour remain.
  4. Preheat the oven to 350°F. Use a large scoop to divide the batter among the liners—batter should reach almost to the top. Let the filled pan rest for 15 minutes while the oven finishes preheating; this brief rest helps hydrate the gluten‑free starches for a better texture.
  5. Bake for about 25 minutes, rotating pans halfway through. Muffins are done when tops are set and a toothpick inserted in the center comes out clean. Cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.
a stack of two carrot muffins with the paper taken off.

Extra Yummy Modifications

These muffins adapt easily. Keep a few key ingredients the same for structure, but feel free to swap or omit mix‑ins.

  • Nuts – Replace pecans with walnuts, almonds, macadamia nuts, or seeds like pepitas or sunflower seeds, or omit altogether.
  • Dried fruit – Swap raisins for golden raisins, dried cranberries, chopped dates, or dried cherries.
  • Trail mix – Use an equal amount of trail mix in place of the coconut, nuts, and raisins; check labels to ensure the blend is gluten‑free.
  • Flaxseed – For a heartier, whole‑grain feel, add up to 2 tablespoons of whole or ground flaxseed.
  • Crushed pineapple – Replace 1/2 cup shredded apple with well‑drained crushed pineapple, measured after draining.
a bite taken out of a muffin stacked on other muffins.

Moist Gluten‑Free Morning Glory Muffins (One Bowl)

Author: Melissa Erdelac

Yield: 16 muffins

Prep time: 15 mins • Cook time: 25 mins • Total time: 55 mins

Ingredients

  • 1/2 cup unsweetened applesauce
  • 1/2 cup packed light brown sugar
  • 1/4 cup oil (any preferred)
  • 1/4 cup honey
  • 2 large eggs
  • 2 teaspoons orange zest
  • 1/4 cup orange juice (from zested orange)
  • 2 teaspoons vanilla extract
  • 1 cup grated carrot (peeled)
  • 1 cup grated apple (peeled)
  • 1/2 cup raisins
  • 1/2 cup shredded coconut
  • 1/2 cup chopped pecans
  • 1 1/2 cups gluten‑free all‑purpose flour
  • 2 teaspoons baking soda
  • 2 teaspoons ground cinnamon
  • 1/2 teaspoon ground ginger
  • 1/4 teaspoon salt

Equipment

  • Standard muffin tin and paper liners
  • Large mixing bowl and whisk or spoon
  • Box grater or food‑processor grating disc
  • Large cookie scoop (optional) for even portions

Instructions

  1. Line a standard muffin pan with liners or grease the cups.
  2. Whisk together applesauce, brown sugar, oil, honey, eggs, orange zest and juice, and vanilla extract in a large bowl.
  3. Stir in grated carrot, grated apple, raisins, coconut, and pecans.
  4. Add the gluten‑free flour, baking soda, cinnamon, ground ginger, and salt. Stir until the batter is uniform and no dry flour pockets remain.
  5. Preheat oven to 350°F. Divide the batter between the muffin cups, filling nearly to the top. Let the filled pan rest for 15 minutes while the oven finishes preheating.
  6. Bake 25 minutes, rotating midway. Muffins are done when tops are set and a toothpick comes out clean. Cool 5 minutes in the pan, then transfer to a wire rack.

Notes: Storing and Freezing

Once fully cooled, store muffins in an airtight container at room temperature for up to 2 days. Avoid refrigeration, which can dry them out; loosely cover with foil rather than plastic wrap to prevent soggy tops. For longer storage, wrap cooled muffins individually and freeze in a freezer‑safe bag or container for up to 3 months.

Nutrition (per muffin)

Calories: 184 kcal • Carbohydrates: 28 g • Protein: 3 g • Fat: 8 g • Fiber: 3 g • Sugar: 15 g • Vitamin A: 1384 IU • Vitamin C: 4 mg